The role of lymphotoxin-B receptor signaling in t-cell acute lymphoblastic leukemia development

Dissertação de mest., Ciências Biomédicas, Faculdade de Ciências e Tecnologia, Univ. do Algarve, 2010

Study of influence of regulatory polymorphisms of expression in development of breast cancer

The human genome has millions of genetics variants that can affect gene expression. These variants are known as cis-regulatory variants and are responsible for intra-species phenotypic differences and individual susceptibility to disease. One of the diseases affected by cis-regulatory variants is breast cancer. Breast cancer is one of the most common cancers, with approximately 4500 new cases each year in Portugal. Breast cancer has many genes mutated and TP53 has been shown to be relevant for this disease. TP53 is one of the most commonly mutated genes in human cancer and it is involved in cell cycle regulation and apoptosis. Previous work by Maia et al has shown that TP53 has differential allelic expression (DAE), which suggests that this gene may be under the influence of cis-regulatory variants. Also, its DAE pattern is totally altered in breast tumours with normal copy number. We hypothesized that cis-regulatory variants affecting TP53 may have a role in breast cancer development and treatment. The present work aims to identify the cis-regulatory variants playing a role in TP53 expression, using in silico, in vitro and in vivo approaches. By bioinformatic tools we have identified candidate cis-regulatory variants and predicted the possible transcription factor binding sites that they affect. By EMSA we studied DNA-protein interactions in this region of TP53. The in silico analysis allowed us to identified three candidate cis-regulatory SNPs which may affect the binding of seven transcription factors. However, the EMSA experiments have not been conclusive and we have not yet confirmed whether any of the identified SNPs are associated with gene expression control of TP53. We will carry out further experiments to validate our findings.

Development of a Piggybac based direct reprogramming system for derivation of integration free induced pluripotent stem cells

Induced pluripotent stem cells (iPSc) have great potential for applications in regenerative medicine, disease modeling and basic research. Several methods have been developed for their derivation. The original method of Takahashi and Yamanaka involved the use of retroviral vectors which result in insertional mutagenesis, presence in the genome of potential oncogenes and effects of residual transgene expression on differentiation bias of each particular iPSc line. Other methods have been developed, using different viral vectors (adenovirus and Sendai virus), transient plasmid transfection, mRNA transduction, protein transduction and use of small molecules. However, these methods suffer from low efficiencies; can be extremely labor intensive, or both. An additional method makes use of the piggybac transposon, which has the advantage of inserting its payload into the host genome and being perfectly excised upon re-expression of the transposon transposase. Briefly, a policistronic cassette expressing Oct4, Sox2, Klf4 and C-Myc flanked by piggybac terminal repeats is delivered to the cells along with a plasmid transiently expressing piggybac transposase. Once reprogramming occurs, the cells are re-transfected with transposase and subclones free of tranposon integrations screened for. The procedure is therefore very labor intensive, requiring multiple manipulations and successive rounds of cloning and screening. The original method for reprogramming with the the PiggyBac transposon was created by Woltjen et al in 2009 (schematized here) and describes a process with which it is possible to obtain insert-free iPSc. Insert-free iPSc enables the establishment of better cellular models of iPS and adds a new level of security to the use of these cells in regenerative medicine. Due to the fact that it was based on several low efficiency steps, the overall efficiency of the method is very low (<1%). Moreover, the stochastic transfection, integration, excision and the inexistence of an active way of selection leaves this method in need of extensive characterization and screening of the final clones. In this work we aime to develop a non-integrative iPSc derivation system in which integration and excision of the transgenes can be controlled by simple media manipulations, avoiding labor intensive and potentially mutagenic procedures. To reach our goal we developed a two vector system which is simultaneously delivered to original population of fibroblasts. The first vector, Remo I, carries the reprogramming cassette and GFP under the regulation of a constitutive promoter (CAG). The second vector, Eneas, carries the piggybac transposase associated with an estrogen receptor fragment (ERT2), regulated in a TET-OFF fashion, and its equivalent reverse trans-activator associated with a positive-negative selection cassette under a constitutive promoter. We tested its functionality in HEK 293T cells. The protocol is divided in two the following steps: 1) Obtaining acceptable transfection efficiency into human fibroblasts. 2) Testing the functionality of the construct 3) Determining the ideal concentration of DOX for repressing mPB-ERT2 expression 4) Determining the ideal concentration of TM for transposition into the genome 5) Determining the ideal Windows of no DOX/TM pulse for transposition into the genome 6) 3, 4 and 5) for transposition out of the genome 7) Determination of the ideal concentration of GCV for negative selection We successfully demonstrated that ENEAS behaved as expected in terms of DOX regulation of the expression of mPB-ERT2. We also demonstrated that by delivering the plasmid into 293T HEK cells and manipulating the levels of DOX and TM in the medium, we could obtain puromycin resistant lines. The number of puromycin resistant colonies obtained was significantly higher when DOX as absent, suggesting that the colonies resulted from transposition events. Presence of TM added an extra layer of regulation, albeit weaker. Our PCR analysis, while not a clean as would be desired, suggested that transposition was indeed occurring, although a background level of random integration could not be ruled out. Finally, our attempt to determine whether we could use GVC to select clones that had successfully mobilized PB out of the genome was unsuccessful. Unexpectedly, 293T HEK cells that had been transfected with ENEAS and selected for puromycin resistance were insensitive to GCV.

Molecular structure and functional analysis of runx3 in zebrafish

Tese de doutoramento, Ciências Biomédicas, Universidade do Algarve, Departamento de Ciências Biomédicas e Medicina, 2014

Identification and molecular characterization of bone-related micrornas: functional implications

Tese de doutoramento, Ciências Biomédicas, Departamento de Ciências Biomédicas e Medicina, Universidade do Algarve, 2014

Cited2 in mouse embryonic fibroblasts reprogramming

Dissertação de Mestrado, Ciências Biomédicas, Departamento de Ciências Biomédicas e Medicina, Universidade do Algarve, 2014

Influência de factores internos e externos no (in)sucesso escolar

Dissertação de mest., Psicologia, Faculdade de Ciências Humanas e Sociais, Univ. do Algarve, 2007

Envolvimento de Phytophthora cinnamomi no declínio de Quercus suber e Q. rotundifolia: estudo da influência de factores bióticos e abióticos na progressão da doença. Possibilidades de controlo químico do declínio

Tese dout., Ciências Agrárias, Universidade do Algarve, 2007

Estudo da influência de factores abióticos na pesca com palangre costeiro

Dissertação de Mestrado, Aquacultura e Pescas, Faculdade de Ciências do Mar e do Ambiente, Universidade do Algarve, 2008

Estudo dos factores de motivação para o rendimento escolar em matemática

Dissertação mest., Observação e Análise da Relação Educativa, Universidade do Algarve, 2006

Análise de vários factores que influenciam a definição das chaves do território: o caso da freguesia de Cernache do Bonjardim

A Freguesia de Cernache do Bonjardim é limitada a norte e a oeste pelo Rio Zêzere e a sul pela Ribeira da Sertã, que constituem uma fronteira natural com os Concelhos de Figueiró dos Vinhos e Ferreira do Zêzere e a Freguesia de Palhais; a este confina com a Freguesia do Castelo, Cabeçudo e Nesperal. Percebe-se claramente o factor condicionante que são as barragens da linha do Zêzere na vivência e desenvolvimento das aldeias. O património foi limitado pelos factores naturais e, obviamente, os factores humanos. Existe uma diferença no povoamento das aldeias situadas em zonas acidentada e em zonas planas. Isto apresenta ligações com o tipo de orografia, de geologia, de solo, com o tipo de utilização desse solo e com o espaço disponível para a aldeia crescer. O objectivo deste artigo é perceber de que forma todos estes factores influenciam as chaves do território.

Growth conditions, omega - 3 fatty acid concentrations and gene expression of fatty acid desaturases in Portulaca oleracea leaves

Tese de dout., Ciências Biotecnológicas (Biotecnologia Vegetal), Univ. do Algarve, 2009

Coesão familiar, competências parentais e factores de risco em mães imigrantes e portuguesas

Dissertação de mest., Psicologia Clínica e da Saúde, Faculdade de Ciências Humanas e Sociais, Univ. do Algarve, 2011

Cultura suicida no Alentejo: os factores promotores de ideação suicida e desesperança

Dissertação de mest., Psicologia (Psicologia da Saúde), Faculdade de Ciências Humanas e Sociais, Univ. do Algarve, 2010

Apoio social, factores de risco e competências parentais percebidas em famílias multiproblemáticas no concelho de Silves

A família é caracterizada como o espaço de vivência de relações afetivas profundas: a filiação, a fraternidade, o amor, a sexualidade, numa trama de emoções e afetos positivos e negativos que, na sua elaboração, vão dando corpo ao sentimento de sermos quem somos e de pertencermos àquela e não a outra qualquer família. No contexto das Famílias “Multiproblemáticas” o principal desafio com que os técnicos se deparam é a relação que se estabelece entre profissionais e estas famílias, que enquadrados no modelo Ecossistémico, conceptualizou-se o desenvolvimento dos guiões de avaliação do profissional que implicam uma interrelação recursiva dos contextos dos quais faz parte. O presente trabalho pretende compreender as implicações de variáveis pessoais (experiência parental, bem-estar psicológico, satisfação com a vida familiar, satisfação com o apoio institucional entre outras). Concluiu-se que a família, desempenha um papel preponderante na eficácia das competências parentais. Assim, sugere-se o desenvolvimento de programas de intervenção junto destes familiares de forma a prevenir e minimizar os fatores de risco.